Package: BayesNetBP 1.6.2

Han Yu

BayesNetBP: Bayesian Network Belief Propagation

Belief propagation methods in Bayesian Networks to propagate evidence through the network. The implementation of these methods are based on the article: Cowell, RG (2005). Local Propagation in Conditional Gaussian Bayesian Networks <https://www.jmlr.org/papers/v6/cowell05a.html>. For details please see Yu et. al. (2020) BayesNetBP: An R Package for Probabilistic Reasoning in Bayesian Networks <doi:10.18637/jss.v094.i03>. The optional 'cyjShiny' package for running the Shiny app is available at <https://github.com/cytoscape/cyjShiny>. Please see the example in the documentation of 'runBayesNetApp' function for installing 'cyjShiny' package from GitHub.

Authors:Han Yu, Rachael Blair, Janhavi Moharil, Andrew Yan

BayesNetBP_1.6.2.tar.gz
BayesNetBP_1.6.2.zip(r-4.7-any)BayesNetBP_1.6.2.zip(r-4.6-any)BayesNetBP_1.6.2.zip(r-4.5-any)
BayesNetBP_1.6.2.tgz(r-4.6-any)BayesNetBP_1.6.2.tgz(r-4.5-any)
BayesNetBP_1.6.2.tar.gz(r-4.7-any)BayesNetBP_1.6.2.tar.gz(r-4.6-any)
BayesNetBP_1.6.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BayesNetBP/json (API)

# Install 'BayesNetBP' in R:
install.packages('BayesNetBP', repos = c('https://hyu-ub.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hyu-ub/bayesnetbp/issues

Datasets:
  • chest - A simulated data from the Chest Clinic example
  • emission - A ClusterTree Example of Emission Model
  • emission1000 - A simulated data from the Emission example
  • liver - Mus Musculus HDL QTL data from Leduc et. al.
  • toytree - A ClusterTree Example of Liver Model
  • yeast - Saccharomyces Cerevisiae eQTL data from Kruglak et. al.

On CRAN:

Conda:

bayesian-networksconditional-gaussiannetwork-inferenceprobabilistic-graphical-models

4.00 score 20 stars 3 scripts 424 downloads 1 mentions 18 exports 58 dependencies

Last updated from:40bf771539. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK182
source / vignettesOK218
linux-releaseOK207
macos-releaseOK206
macos-oldrelOK265
windows-develOK152
windows-releaseOK171
windows-oldrelOK165
wasm-releaseOK132

Exports:AbsorbEvidencebn_to_graphNELClusterTreeCompileComputeKLDsElimTreeInitializeFactorQueryGetValueInitializerLocalModelCompileMarginalsPlotCGBNPlotMarginalsPlotTreePropagateqtlnet_to_graphNELrunBayesNetAppSamplerSummaryMarginals

Dependencies:backportsBiocGenericsbnlearnbootbroomclicolorspacecowplotcpp11DerivdoBydotCall64dplyrfarverfieldsforecastfracdiffgenericsggplot2gluegraphgtableigraphisobandlabelinglatticelifecyclelmtestmagrittrmapsMASSMatrixmodelrnlmennetpillarpkgconfigpurrrR6RColorBrewerRcppRcppArmadillorlangS7scalesspamstringistringrtibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo