{ "_id": "6ad1f0fc29625c14e47af24c", "Package": "BayesNetBP", "Type": "Package", "Title": "Bayesian Network Belief Propagation", "Version": "1.6.2", "Date": "2025-05-31", "Author": "Han Yu, Rachael Blair, Janhavi Moharil, Andrew Yan", "Maintainer": "Han Yu ", "BugReports": "https://github.com/hyu-ub/BayesNetBP/issues", "LazyData": "true", "Description": "Belief propagation methods in Bayesian Networks to\npropagate evidence through the network. The implementation of\nthese methods are based on the article: Cowell, RG (2005).\nLocal Propagation in Conditional Gaussian Bayesian Networks\n. For details\nplease see Yu et. al. (2020) BayesNetBP: An R Package for\nProbabilistic Reasoning in Bayesian Networks\n. The optional 'cyjShiny' package\nfor running the Shiny app is available at\n. Please see the example\nin the documentation of 'runBayesNetApp' function for\ninstalling 'cyjShiny' package from GitHub.", "License": "GPL (>= 2)", "RoxygenNote": "7.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-16 09:06:50 UTC", "User": "root" }, "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev", "Repository": "https://hyu-ub.r-universe.dev", "Date/Publication": "2025-06-02 22:30:12 UTC", "RemoteUrl": "https://github.com/hyu-ub/bayesnetbp", "RemoteRef": "HEAD", "RemoteSha": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "RemoteSubdir": "BayesNetBP", "_user": "hyu-ub", "_type": "src", "_file": "BayesNetBP_1.6.2.tar.gz", "_fileid": "https://r2.ropensci.org/bfa3a43788f6c5b0f8307a5b0705338dd2a48d9b0c33e1f26519808d0abc646b", "_filesize": 280448, "_sha256": "bfa3a43788f6c5b0f8307a5b0705338dd2a48d9b0c33e1f26519808d0abc646b", "_expires": "2027-01-24T09:40:11.000Z", "_created": "2026-10-16T09:06:50.000Z", "_published": "2026-10-16T09:40:12.740Z", "_buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 116898505777, "time": 182, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12035674075" }, { "job": 116898505605, "time": 207, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12037010138" }, { "job": 116898505749, "time": 265, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12037592729" }, { "job": 116898505901, "time": 206, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12037752652" }, { "job": 116897118795, "time": 218, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12036785471" }, { "job": 116898505809, "time": 132, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12036362085" }, { "job": 116898505708, "time": 152, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12036800842" }, { "job": 116898505702, "time": 165, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12036506744" }, { "job": 116898505818, "time": 171, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12035898637" } ], "_upstream": "https://github.com/hyu-ub/bayesnetbp", "_commit": { "id": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "author": "hyu-ub ", "committer": "GitHub ", "message": "Update B1_ModelCompileData.R", "time": 1748903412 }, "_maintainer": { "name": "Han Yu", "email": "hyu9@buffalo.edu", "login": "hy20189", "description": "", "uuid": 154363023 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "utils", "role": "Depends" }, { "package": "igraph", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "fields", "role": "Imports" }, { "package": "doBy", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "graph", "role": "Imports" }, { "package": "bnlearn", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "Rgraphviz", "role": "Suggests" }, { "package": "shiny", "role": "Suggests" }, { "package": "googleVis", "role": "Suggests" }, { "package": "cyjShiny", "role": "Suggests" }, { "package": "qtl", "role": "Suggests" }, { "package": "qtlnet", "role": "Suggests" } ], "_owner": "hyu-ub", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "bayesian-networks", "conditional-gaussian", "network-inference", "probabilistic-graphical-models" ], "_stars": 20, "_contributors": [ { "user": "hyu-ub", "count": 75, "uuid": 29735361 } ], "_userbio": { "uuid": 29735361, "type": "user", "name": "hyu-ub", "followers": 4 }, "_downloads": { "count": 424, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BayesNetBP" }, "_mentions": 1, "_devurl": "https://github.com/hyu-ub/bayesnetbp", "_searchresults": 3, "_rbuild": "4.6.1", "_assets": [ "extra/BayesNetBP.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/hyu-ub/bayesnetbp", "_realowner": "hyu-ub", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2017-05-08" }, { "version": "1.2.1", "date": "2017-06-06" }, { "version": "1.3.0", "date": "2018-02-16" }, { "version": "1.4.0", "date": "2018-08-22" }, { "version": "1.5.2", "date": "2020-04-14" }, { "version": "1.5.5", "date": "2020-06-25" }, { "version": "1.5.9", "date": "2021-06-01" }, { "version": "1.6.1", "date": "2022-05-08" } ], "_exports": [ "AbsorbEvidence", "bn_to_graphNEL", "ClusterTreeCompile", "ComputeKLDs", "ElimTreeInitialize", "FactorQuery", "GetValue", "Initializer", "LocalModelCompile", "Marginals", "PlotCGBN", "PlotMarginals", "PlotTree", "Propagate", "qtlnet_to_graphNEL", "runBayesNetApp", "Sampler", "SummaryMarginals" ], "_datasets": [ { "name": "chest", "title": "A simulated data from the Chest Clinic example", "object": "chest", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "emission", "title": "A ClusterTree Example of Emission Model", "object": "emission", "class": [ "ClusterTree" ], "fields": [], "table": false, "tojson": false }, { "name": "emission1000", "title": "A simulated data from the Emission example", "object": "emission1000", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "liver", "title": "Mus Musculus HDL QTL data from Leduc et. al. (2012)", "object": "liver", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "toytree", "title": "A ClusterTree Example of Liver Model", "object": "toytree", "class": [ "ClusterTree" ], "fields": [], "table": false, "tojson": false }, { "name": "yeast", "title": "Saccharomyces Cerevisiae eQTL data from Kruglak et. al. (2005)", "object": "yeast", "class": [ "data.frame" ], "fields": [ "Qchr4", "Qchr3", "Qchr12", "Qchr14", "Qchr2", "Qchr5", "Qchr9", "Qchr16", "Qchr8", "Qchr13", "Qchr1", "Qchr15", "HEM3", "BAP2", "ERG9", "PHA2", "ERG6", "ERG12", "TAT1", "FLX1", "MSY1", "GRX5", "VMA13", "LAT1", "NCP1", "SLM5", "MSE1", "ALD6", "HIS3", "NAM2", "ACS1", "YNL045W", "RBK1", "YMR293C", "LCB4", "PPA2", "DIA4", "MIR1", "YEL047C", "MSK1", "TRP3", "THI22", "TNA1", "MSD1", "YER152C", "TAT2", "TYS1", "YAT2", "YEL041W", "COX10" ], "rows": 112, "table": true, "tojson": true } ], "_help": [ { "page": "AbsorbEvidence", "title": "Absorb evidence into the model", "topics": [ "AbsorbEvidence" ] }, { "page": "bn_to_graphNEL", "title": "Convert a bn object to graphNEL object", "topics": [ "bn_to_graphNEL" ] }, { "page": "chest", "title": "A simulated data from the Chest Clinic example", "topics": [ "chest" ] }, { "page": "ClusterTree-class", "title": "An S4 class of the cluster tree.", "topics": [ "ClusterTree-class" ] }, { "page": "ClusterTreeCompile", "title": "Compile the cluster tree", "topics": [ "ClusterTreeCompile" ] }, { "page": "ComputeKLDs", "title": "Compute signed and symmetric Kullback-Leibler divergence", "topics": [ "ComputeKLDs" ] }, { "page": "ElimTreeInitialize", "title": "Initialize the elimination tree", "topics": [ "ElimTreeInitialize" ] }, { "page": "emission", "title": "A ClusterTree Example of Emission Model", "topics": [ "emission" ] }, { "page": "emission1000", "title": "A simulated data from the Emission example", "topics": [ "emission1000" ] }, { "page": "FactorQuery", "title": "Queries of discrete variable distributions", "topics": [ "FactorQuery" ] }, { "page": "GetValue", "title": "Possible values of a discrete variable", "topics": [ "GetValue" ] }, { "page": "Initializer", "title": "Initialize a ClusterTree object", "topics": [ "Initializer" ] }, { "page": "liver", "title": "Mus Musculus HDL QTL data from Leduc et. al. (2012)", "topics": [ "liver" ] }, { "page": "LocalModelCompile", "title": "Model compilation", "topics": [ "LocalModelCompile" ] }, { "page": "Marginals", "title": "Obtain marginal distributions", "topics": [ "Marginals" ] }, { "page": "PlotCGBN", "title": "Plot the Bayesian network", "topics": [ "PlotCGBN" ] }, { "page": "PlotMarginals", "title": "Plot the marginal distributions", "topics": [ "PlotMarginals" ] }, { "page": "PlotTree", "title": "Plot the cluster tree", "topics": [ "PlotTree" ] }, { "page": "Propagate", "title": "Propagate the cluster tree", "topics": [ "Propagate" ] }, { "page": "qtlnet_to_graphNEL", "title": "Convert qtlnet to graphNEL object", "topics": [ "qtlnet_to_graphNEL" ] }, { "page": "runBayesNetApp", "title": "Launch the BayesNetBP Shiny App", "topics": [ "runBayesNetApp" ] }, { "page": "Sampler", "title": "Sampling from the Bayesian network", "topics": [ "Sampler" ] }, { "page": "SummaryMarginals", "title": "Summary a continuous marginal distribution", "topics": [ "SummaryMarginals" ] }, { "page": "toytree", "title": "A ClusterTree Example of Liver Model", "topics": [ "toytree" ] }, { "page": "yeast", "title": "Saccharomyces Cerevisiae eQTL data from Kruglak et. al. (2005)", "topics": [ "yeast" ] } ], "_readme": "https://github.com/hyu-ub/bayesnetbp/raw/HEAD/README.md", "_rundeps": [ "backports", "BiocGenerics", "bnlearn", "boot", "broom", "cli", "colorspace", "cowplot", "cpp11", "Deriv", "doBy", "dotCall64", "dplyr", "farver", "fields", "forecast", "fracdiff", "generics", "ggplot2", "glue", "graph", "gtable", "igraph", "isoband", "labeling", "lattice", "lifecycle", "lmtest", "magrittr", "maps", "MASS", "Matrix", "modelr", "nlme", "nnet", "pillar", "pkgconfig", "purrr", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "S7", "scales", "spam", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "timeDate", "urca", "utf8", "vctrs", "viridisLite", "withr", "zoo" ], "_score": 4, "_indexed": true, "_nocasepkg": "bayesnetbp", "_universes": [ "hyu-ub", "hy20189" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.6.2", "date": "2026-10-16T09:09:27.000Z", "distro": "resolute", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/2aedc55dc1611c05dd3dc498652bfeb35a6c95e275707a22e3b22c899d963e58", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" }, { "r": "4.6.1", "os": "linux", "version": "1.6.2", "date": "2026-10-16T09:09:42.000Z", "distro": "resolute", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/8878720709f7e09636aeaf0bb2f34b199f03ea309a7f5dca366efc4c8e5c3c07", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" }, { "r": "4.5.3", "os": "mac", "version": "1.6.2", "date": "2026-10-16T09:38:06.000Z", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/5722aebea03264716880ddab4839ef40284a7ca6795e3119b27bcfb9b223dbf9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" }, { "r": "4.6.1", "os": "mac", "version": "1.6.2", "date": "2026-10-16T09:37:36.000Z", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/640f82860b93ba176ff09b7aaba21abb334c4ee217c719a17dbd23428fa6fcf4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" }, { "r": "4.6.0", "os": "wasm", "version": "1.6.2", "date": "2026-10-16T09:09:52.000Z", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/3bb5fae0b8a2324963b3f7ace212c03692485f01b8e9848b7b8d5fc2270fdfc5", "status": "success", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" }, { "r": "4.7.0", "os": "win", "version": "1.6.2", "date": "2026-10-16T09:08:27.000Z", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/1dc5a8e38ac448373dd839e43a39c05e8406bf253a0a6d43a0997a3c65fdfab6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" }, { "r": "4.5.3", "os": "win", "version": "1.6.2", "date": "2026-10-16T09:08:38.000Z", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/4cad82216b9a45e543b18589ae465991e5bee5663653778c0ccbe556b978037b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" }, { "r": "4.6.1", "os": "win", "version": "1.6.2", "date": "2026-10-16T09:08:51.000Z", "commit": "40bf771539ee001ac99fa16badd7ccf23cd9f3c8", "fileid": "https://r2.ropensci.org/4f0b96a558ee4b86cf6743ba6f2968dfda41bbce6d78b2a51959c8855aa8be26", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hyu-ub/actions/runs/38877806978" } ] }